PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.010G073600.4
Common NameB456_010G073600, LOC105773806
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bHLH
Protein Properties Length: 353aa    MW: 38757.2 Da    PI: 7.2053
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.010G073600.4genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH11.80.000462212591255
                         HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH  12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                         R +++ +++  L +l+ +      +K + a++L +A+ YI+ Lq
  Gorai.010G073600.4 221 RKEKLGDRITALHQLVSPF-----GKTDTASVLLEAIGYIRFLQ 259
                         6677889999999999998.....8******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.49209258IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.74E-6219263No hitNo description
SuperFamilySSF474595.5E-10219269IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.0E-7223265IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 353 aa     Download sequence    Send to blast
MNRGVLQSSP LQQMTAGNLN WWNINSTMRP PPTTHLQPPS HFLPPSPPTL FPQFTPTPTS  60
SSSSSWNDNN QELPQSWSQL LFCGLMGEEE KGGIGQFQVQ PKKLENWEEQ ALQQTSNAIS  120
AVDVKQENPN NYVYGHANED FHHQASKPAW SHQIMATSSA LSPKSGVTSF SSKMLEFSGN  180
KADARQPHPD RSSECNSSAS GGAWKKARVQ PSATQSTFKV RKEKLGDRIT ALHQLVSPFG  240
KTDTASVLLE AIGYIRFLQS QIEALSLPYL GNGSGNIRQQ QPVQGERNCI FPEDPGQLLN  300
ENSMKRKGGP DRQECDEEPK KDLRSRGLCL VPVSCTLQVG SDNGADYWAP AL*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012451397.10.0PREDICTED: transcription factor bHLH68-like isoform X3
SwissprotQ8S3D11e-108BH068_ARATH; Transcription factor bHLH68
TrEMBLA0A0D2V6Z10.0A0A0D2V6Z1_G
STRINGVIT_11s0016g03560.t011e-167(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29100.11e-100bHLH family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]